IL_1Z58_028

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGUAG*CGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_028 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3415

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

1Z58|1|2|C|870
1Z58|1|2|U|871
1Z58|1|2|G|872
1Z58|1|2|U|873
1Z58|1|2|A|874
1Z58|1|2|G|875
*
1Z58|1|2|C|927
1Z58|1|2|G|928
1Z58|1|2|A|929
1Z58|1|2|A|930
1Z58|1|2|G|931
1Z58|1|2|G|932

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains