IL_1Z58_032

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGG,CCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_032 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.2294

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

1Z58|1|2|A|886
1Z58|1|2|G|887
1Z58|1|2|G|888
*
1Z58|1|2|C|914
1Z58|1|2|C|915
1Z58|1|2|U|916

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains