IL_1Z58_069

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

1Z58|1|2|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_069 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.2332

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1Z58|1|2|C|1703
1Z58|1|2|G|1704
1Z58|1|2|U|1705
1Z58|1|2|A|1706
1Z58|1|2|A|1707
1Z58|1|2|C|1708
*
1Z58|1|2|G|1713
1Z58|1|2|A|1714
1Z58|1|2|A|1715
1Z58|1|2|G|1716
1Z58|1|2|A|1717
1Z58|1|2|A|1718
1Z58|1|2|G|1719

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains