IL_1Z58_083

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

1Z58|1|2|A|1921, 1Z58|1|2|U|1927, 1Z58|1|2|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_083 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.3933

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

1Z58|1|2|C|1917
1Z58|1|2|G|1918
1Z58|1|2|A|1919
1Z58|1|2|A|1920
1Z58|1|2|A|1921
1Z58|1|2|U|1922
1Z58|1|2|U|1923
1Z58|1|2|C|1924
1Z58|1|2|C|1925
1Z58|1|2|U|1926
1Z58|1|2|U|1927
1Z58|1|2|G|1928
*
1Z58|1|2|C|1944
1Z58|1|2|C|1945
1Z58|1|2|U|1946
1Z58|1|2|G|1947

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains