IL_1Z58_094

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_094 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.329

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

1Z58|1|2|G|2328
1Z58|1|2|C|2329
1Z58|1|2|G|2330
1Z58|1|2|A|2331
1Z58|1|2|G|2332
*
1Z58|1|2|C|2343
1Z58|1|2|G|2344
1Z58|1|2|A|2345
1Z58|1|2|G|2346
1Z58|1|2|C|2347

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains