IL_1Z58_113

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_113 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1184

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1Z58|1|2|G|2717
1Z58|1|2|A|2718
1Z58|1|2|U|2719
1Z58|1|2|A|2720
1Z58|1|2|A|2721
1Z58|1|2|C|2722
*
1Z58|1|2|G|2742
1Z58|1|2|G|2743
1Z58|1|2|A|2744
1Z58|1|2|A|2745
1Z58|1|2|G|2746
1Z58|1|2|C|2747

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains