IL_1Z58_118

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_118 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.2157

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

1Z58|1|2|U|2822
1Z58|1|2|G|2823
1Z58|1|2|C|2824
1Z58|1|2|A|2825
1Z58|1|2|C|2826
1Z58|1|2|G|2827
*
1Z58|1|2|U|2840
1Z58|1|2|U|2841
1Z58|1|2|C|2842
1Z58|1|2|A|2843
1Z58|1|2|G|2844

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains