IL_1Z58_125

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AGAC*GCU

Length

7 nucleotides

Bulged bases

1Z58|1|2|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_125 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.2351

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

1Z58|1|2|A|599
1Z58|1|2|G|600
1Z58|1|2|A|601
1Z58|1|2|C|602
*
1Z58|1|2|G|678
1Z58|1|2|C|679
1Z58|1|2|U|680

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains