IL_1Z58_147

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AACGU*ACAGUU

Length

11 nucleotides

Bulged bases

1Z58|1|2|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Z58_147 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3683

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

1Z58|1|2|A|2568
1Z58|1|2|A|2569
1Z58|1|2|C|2570
1Z58|1|2|G|2571
1Z58|1|2|U|2572
*
1Z58|1|2|A|2579
1Z58|1|2|C|2580
1Z58|1|2|A|2581
1Z58|1|2|G|2582
1Z58|1|2|U|2583
1Z58|1|2|U|2584

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains