IL_1Z79_002

3D structure

PDB id

1Z79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

A(A5M)U*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A5M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1Z79|1|A|A|5
1Z79|1|A|A5M|6
1Z79|1|A|U|7
*
1Z79|1|B|A|10
1Z79|1|B|A|11
1Z79|1|B|U|12

Current chains

Chain A

RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'

Chain B

RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'

Nearby chains