IL_22EU_006

3D structure

PDB id

22EU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Retron Ec78 complex (trans)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CGGGU*GCCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_22EU_006 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.2775

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

22EU|1|N|C|7
22EU|1|N|G|8
22EU|1|N|G|9
22EU|1|N|G|10
22EU|1|N|U|11
*
22EU|1|N|G|17
22EU|1|N|C|18
22EU|1|N|C|19
22EU|1|N|A|20
22EU|1|N|G|21

Current chains

Chain N

RNA (66-MER)

Nearby chains

Chain A

Retron

Chain B

PtuA