IL_22TU_090

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_22TU_090 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.049

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

22TU|1|L5|G|2358
22TU|1|L5|U|2359
22TU|1|L5|A|2360
22TU|1|L5|G|2361
22TU|1|L5|U|2362
22TU|1|L5|A|2363
22TU|1|L5|G|2364
*
22TU|1|L5|C|3858
22TU|1|L5|G|3859
22TU|1|L5|A|3860
22TU|1|L5|A|3861
22TU|1|L5|A|3862
22TU|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain zx

nascent peptide