IL_22TU_100

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

22TU|1|L5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_22TU_100 not in the Motif Atlas

Homologous match to IL_8GLP_099

Geometric discrepancy: 0.0893

The information below is about IL_8GLP_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

22TU|1|L5|C|2646
22TU|1|L5|A|2647
22TU|1|L5|G|2648
*
22TU|1|L5|C|2685
22TU|1|L5|G|2686
22TU|1|L5|U|2687
22TU|1|L5|G|2688

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34