IL_8GLP_099

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8GLP|1|L5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_099 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.0869

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8GLP|1|L5|C|2646
8GLP|1|L5|A|2647
8GLP|1|L5|G|2648
*
8GLP|1|L5|C|2685
8GLP|1|L5|G|2686
8GLP|1|L5|U|2687
8GLP|1|L5|G|2688

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34