IL_22TU_133

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

22TU|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_22TU_133 not in the Motif Atlas

Homologous match to IL_9PN5_100

Geometric discrepancy: 0.117

The information below is about IL_9PN5_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

22TU|1|L5|G|4405
22TU|1|L5|U|4406
22TU|1|L5|G|4407
*
22TU|1|L5|U|4435
22TU|1|L5|U|4436
22TU|1|L5|U|4437
22TU|1|L5|U|4438
22TU|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

Large ribosomal subunit protein uL16