IL_22TU_242
3D structure
- PDB id
- 22TU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with DHX29
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 22TU|1|S2|C|1331, 22TU|1|S2|U|1494, 22TU|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_22TU_242 not in the Motif Atlas
- Homologous match to IL_9H3G_220
- Geometric discrepancy: 0.0663
- The information below is about IL_9H3G_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
22TU|1|S2|U|1329
22TU|1|S2|G|1330
22TU|1|S2|C|1331
22TU|1|S2|A|1332
22TU|1|S2|U|1333
22TU|1|S2|G|1334
22TU|1|S2|G|1335
*
22TU|1|S2|U|1492
22TU|1|S2|C|1493
22TU|1|S2|U|1494
22TU|1|S2|G|1495
22TU|1|S2|U|1496
22TU|1|S2|G|1497
22TU|1|S2|A|1498
22TU|1|S2|U|1499
22TU|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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