IL_23WI_026

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_026 not in the Motif Atlas

Geometric match to IL_9E6Q_008

Geometric discrepancy: 0.1205

The information below is about IL_9E6Q_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

23WI|1|5|G|1310
23WI|1|5|G|1311
23WI|1|5|U|1312
23WI|1|5|U|1313
*
23WI|1|5|A|1603
23WI|1|5|C|1604

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain T

50S ribosomal protein L23