IL_23WI_037

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_037 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5922

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

23WI|1|5|U|1474
23WI|1|5|G|1475
23WI|1|5|U|1476
23WI|1|5|A|1477
23WI|1|5|G|1478
*
23WI|1|5|U|1513
23WI|1|5|G|1514
23WI|1|5|A|1515
23WI|1|5|G|1516
23WI|1|5|G|1517

Current chains

Chain 5

RNA (2014-MER)

Nearby chains