IL_23WI_039

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

23WI|1|5|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_039 not in the Motif Atlas

Geometric match to IL_4V9F_098

Geometric discrepancy: 0.3342

The information below is about IL_4V9F_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

23WI|1|5|C|1489
23WI|1|5|A|1490
23WI|1|5|G|1491
*
23WI|1|5|C|1499
23WI|1|5|G|1500

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain C

Large ribosomal subunit protein uL2