IL_23WI_040

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_040 not in the Motif Atlas

Geometric match to IL_8B0X_122

Geometric discrepancy: 0.0981

The information below is about IL_8B0X_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

23WI|1|5|C|1526
23WI|1|5|G|1527
23WI|1|5|A|1528
23WI|1|5|G|1529
*
23WI|1|5|U|1542
23WI|1|5|G|1543
23WI|1|5|A|1544
23WI|1|5|A|1545
23WI|1|5|G|1546

Current chains

Chain 5

RNA (2014-MER)

Nearby chains