IL_23WI_041

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_041 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.0787

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.6

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

23WI|1|5|G|1651
23WI|1|5|A|1652
23WI|1|5|G|1653
23WI|1|5|A|1654
23WI|1|5|A|1655
23WI|1|5|C|1656
*
23WI|1|5|G|2004
23WI|1|5|A|2005
23WI|1|5|C|2006

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17