IL_23WI_063

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_063 not in the Motif Atlas

Homologous match to IL_7A0S_078

Geometric discrepancy: 0.4379

The information below is about IL_7A0S_078

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

23WI|1|5|U|2085
23WI|1|5|U|2086
23WI|1|5|G|2087
*
23WI|1|5|C|2232
23WI|1|5|U|2233
23WI|1|5|G|2234

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Large ribosomal subunit protein uL2

Chain X

50S ribosomal protein L28