IL_23WI_065

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_065 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.2704

The information below is about IL_5E81_401

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

23WI|1|5|U|2139
23WI|1|5|G|2140
23WI|1|5|G|2141
*
23WI|1|5|C|2150
23WI|1|5|U|2151
23WI|1|5|G|2152

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain k

Small ribosomal subunit protein uS11