IL_23WI_071

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

(PSU)GA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_071 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1323

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

23WI|1|5|PSU|2457
23WI|1|5|G|2458
23WI|1|5|A|2459
*
23WI|1|5|U|2493
23WI|1|5|G|2494

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain M

50S ribosomal protein L16