IL_23WI_075

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

23WI|1|5|G|2576, 23WI|1|5|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_075 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1184

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

23WI|1|5|C|2510
23WI|1|5|U|2511
23WI|1|5|C|2512
*
23WI|1|5|G|2574
23WI|1|5|C|2575
23WI|1|5|G|2576
23WI|1|5|A|2577
23WI|1|5|G|2578

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3