IL_23WI_077

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

23WI|1|5|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_077 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.0836

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

23WI|1|5|U|2522
23WI|1|5|G|2523
*
23WI|1|5|C|2540
23WI|1|5|A|2541
23WI|1|5|A|2542
23WI|1|5|G|2543

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13