IL_23WI_081

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

23WI|1|5|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_081 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.1466

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

23WI|1|5|U|2680
23WI|1|5|C|2681
23WI|1|5|A|2682
23WI|1|5|C|2683
23WI|1|5|U|2684
*
23WI|1|5|A|2725
23WI|1|5|A|2726
23WI|1|5|A|2727

Current chains

Chain 5

RNA (2014-MER)

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain K

Large ribosomal subunit protein uL14

Chain N

Large ribosomal subunit protein bL17

Chain P

50S ribosomal protein L19