IL_23WI_106

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

23WI|1|A|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_106 not in the Motif Atlas

Homologous match to IL_7A0S_017

Geometric discrepancy: 0.152

The information below is about IL_7A0S_017

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

23WI|1|A|U|702
23WI|1|A|U|703
*
23WI|1|A|G|728
23WI|1|A|G|729
23WI|1|A|A|730

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain C

Large ribosomal subunit protein uL2