IL_23WI_107

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_107 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0866

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

23WI|1|A|U|703
23WI|1|A|G|704
23WI|1|A|A|705
23WI|1|A|A|706
23WI|1|A|G|707
*
23WI|1|A|U|724
23WI|1|A|G|725
23WI|1|A|G|726
23WI|1|A|A|727
23WI|1|A|G|728

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain C

Large ribosomal subunit protein uL2