IL_23WI_116

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

23WI|1|a|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_116 not in the Motif Atlas

Homologous match to IL_6CZR_114

Geometric discrepancy: 0.2422

The information below is about IL_6CZR_114

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

23WI|1|a|A|44
23WI|1|a|G|45
*
23WI|1|a|C|396
23WI|1|a|A|397
23WI|1|a|U|398

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain p

30S ribosomal protein S16