IL_23WI_125

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_125 not in the Motif Atlas

Geometric match to IL_8B0X_011

Geometric discrepancy: 0.1193

The information below is about IL_8B0X_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

23WI|1|a|G|144
23WI|1|a|G|145
23WI|1|a|G|146
*
23WI|1|a|C|176
23WI|1|a|G|177
23WI|1|a|C|178

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain t

Small ribosomal subunit protein bS20