IL_23WI_143

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_23WI_143 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.2353

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

23WI|1|a|G|597
23WI|1|a|U|598
*
23WI|1|a|A|640
23WI|1|a|U|641
23WI|1|a|A|642
23WI|1|a|C|643

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS17