IL_28LN_045

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_045 not in the Motif Atlas

Geometric match to IL_8GLP_235

Geometric discrepancy: 0.1347

The information below is about IL_8GLP_235

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

28LN|1|A2|A|922
28LN|1|A2|G|923
*
28LN|1|A2|C|1019
28LN|1|A2|A|1020
28LN|1|A2|U|1021
28LN|1|A2|U|1022

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain Ab

40S ribosomal protein S27