IL_28LN_072

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_072 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.1303

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

28LN|1|A2|PSU|1347
28LN|1|A2|G|1348
28LN|1|A2|G|1349
*
28LN|1|A2|C|1380
28LN|1|A2|G|1381
28LN|1|A2|A|1382

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AC

40S ribosomal protein S2

Chain AD

40S ribosomal protein S3

Chain AR

40S ribosomal protein S17