IL_28LN_089

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

28LN|1|A2|U|1721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_089 not in the Motif Atlas

Homologous match to IL_9H3G_239

Geometric discrepancy: 0.4743

The information below is about IL_9H3G_239

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

28LN|1|A2|U|1720
28LN|1|A2|U|1721
28LN|1|A2|G|1722
*
28LN|1|A2|U|1812
28LN|1|A2|A|1813

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AX

Small ribosomal subunit protein uS12

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

60S ribosomal protein L23