IL_28LN_098

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

28LN|1|B5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_098 not in the Motif Atlas

Homologous match to IL_8GLP_002

Geometric discrepancy: 0.142

The information below is about IL_8GLP_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

28LN|1|B5|A|12
28LN|1|B5|U|13
28LN|1|B5|C|14
*
28LN|1|B8|G|143
28LN|1|B8|U|144

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

60S ribosomal protein L15

Chain BX

60S ribosomal protein L23a