IL_28LN_115

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

28LN|1|B5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_115 not in the Motif Atlas

Geometric match to IL_8GLP_083

Geometric discrepancy: 0.2857

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

28LN|1|B5|G|448
28LN|1|B5|C|449
28LN|1|B5|G|450
*
28LN|1|B5|U|1296
28LN|1|B5|C|1297

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Be

60S ribosomal protein L32

Chain Bf

60S ribosomal protein L35a