IL_28LN_123

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCCG*CC

Length

7 nucleotides

Bulged bases

28LN|1|B5|C|501, 28LN|1|B5|C|502, 28LN|1|B5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_123 not in the Motif Atlas

Geometric match to IL_8ZAU_001

Geometric discrepancy: 0.1309

The information below is about IL_8ZAU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

28LN|1|B5|G|500
28LN|1|B5|C|501
28LN|1|B5|C|502
28LN|1|B5|C|503
28LN|1|B5|G|504
*
28LN|1|B5|C|654
28LN|1|B5|C|655

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4