IL_28LN_144

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

28LN|1|B5|A|1496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_144 not in the Motif Atlas

Homologous match to IL_8GLP_053

Geometric discrepancy: 0.0981

The information below is about IL_8GLP_053

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

28LN|1|B5|C|1466
28LN|1|B5|C|1467
*
28LN|1|B5|G|1495
28LN|1|B5|A|1496
28LN|1|B5|G|1497

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

60S ribosomal protein L18

Chain Ba

Large ribosomal subunit protein uL15

Chain Bb

Large ribosomal subunit protein eL29