IL_28LN_145

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCCC*GGGG

Length

9 nucleotides

Bulged bases

28LN|1|B5|C|1476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_145 not in the Motif Atlas

Geometric match to IL_6GYV_002

Geometric discrepancy: 0.3875

The information below is about IL_6GYV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

28LN|1|B5|C|1473
28LN|1|B5|G|1474
28LN|1|B5|C|1475
28LN|1|B5|C|1476
28LN|1|B5|C|1477
*
28LN|1|B5|G|1486
28LN|1|B5|G|1487
28LN|1|B5|G|1488
28LN|1|B5|G|1489

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

60S ribosomal protein L13

Chain Ba

Large ribosomal subunit protein uL15

Chain Bo

Large ribosomal subunit protein eL42