IL_28LN_148
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 28LN|1|B5|A|1649, 28LN|1|B5|G|1653
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_148 not in the Motif Atlas
- Homologous match to IL_9PN5_027
- Geometric discrepancy: 0.0773
- The information below is about IL_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
28LN|1|B5|OMG|1521
28LN|1|B5|A|1522
28LN|1|B5|A2M|1523
28LN|1|B5|A|1524
28LN|1|B5|G|1525
*
28LN|1|B5|C|1647
28LN|1|B5|U|1648
28LN|1|B5|A|1649
28LN|1|B5|G|1650
28LN|1|B5|U|1651
28LN|1|B5|A|1652
28LN|1|B5|G|1653
28LN|1|B5|C|1654
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BL
- 60S ribosomal protein L13
- Chain BN
- 60S ribosomal protein L15
- Chain Ba
- Large ribosomal subunit protein uL15
- Chain Bj
- Large ribosomal subunit protein eL37
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