IL_28LN_154

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

28LN|1|B5|OMG|1624, 28LN|1|B5|A|1636, 28LN|1|B5|A|1637, 28LN|1|B5|U|1638

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|G|1623
28LN|1|B5|OMG|1624
28LN|1|B5|G|1625
*
28LN|1|B5|U|1635
28LN|1|B5|A|1636
28LN|1|B5|A|1637
28LN|1|B5|U|1638
28LN|1|B5|C|1639

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B1

Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form

Chain BA

Large ribosomal subunit protein uL2

Chain BN

60S ribosomal protein L15

Chain BP

60S ribosomal protein L17

Chain Bj

Large ribosomal subunit protein eL37