IL_28LN_180
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 28LN|1|B5|U|2304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_180 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.0705
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
28LN|1|B5|C|2301
28LN|1|B5|C|2302
28LN|1|B5|U|2303
28LN|1|B5|U|2304
28LN|1|B5|G|2305
28LN|1|B5|A|2306
28LN|1|B5|A|2307
28LN|1|B5|G|2308
*
28LN|1|B5|U|2328
28LN|1|B5|G|2329
28LN|1|B5|G|2330
28LN|1|B5|A|2331
28LN|1|B5|G|2332
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- 60S ribosomal protein L26
- Chain Be
- 60S ribosomal protein L32
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