IL_28LN_181

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

28LN|1|B5|A|2312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_181 not in the Motif Atlas

Homologous match to IL_8GLP_087

Geometric discrepancy: 0.1452

The information below is about IL_8GLP_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

28LN|1|B5|U|2311
28LN|1|B5|A|2312
28LN|1|B5|G|2313
*
28LN|1|B5|C|2324
28LN|1|B5|G|2325

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Be

60S ribosomal protein L32

Chain Br

Large ribosomal subunit protein eL28