IL_28LN_184

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

28LN|1|B5|A|2427

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_184 not in the Motif Atlas

Homologous match to IL_9AXU_059

Geometric discrepancy: 0.2311

The information below is about IL_9AXU_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

28LN|1|B5|OMU|2414
28LN|1|B5|G|2415
28LN|1|B5|A|2416
28LN|1|B5|A|2417
28LN|1|B5|C|2418
*
28LN|1|B5|G|2426
28LN|1|B5|A|2427
28LN|1|B5|A|2428

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B1

Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form

Chain BP

60S ribosomal protein L17

Chain BR

60S ribosomal protein L19

Chain Bl

60S ribosomal protein L39