IL_28LN_187

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

28LN|1|B5|U|2544, 28LN|1|B5|G|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_187 not in the Motif Atlas

Homologous match to IL_9AXU_061

Geometric discrepancy: 0.3986

The information below is about IL_9AXU_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.5

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

13

Unit IDs

28LN|1|B5|G|2541
28LN|1|B5|A|2542
28LN|1|B5|G|2543
28LN|1|B5|U|2544
28LN|1|B5|G|2545
28LN|1|B5|G|2546
*
28LN|1|B5|C|2771
28LN|1|B5|G|2772
28LN|1|B5|C|2773

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bk

60S ribosomal protein L38