IL_28LN_204

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

28LN|1|B5|A|3662, 28LN|1|B5|U|3678, 28LN|1|B5|C|3682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|3659
28LN|1|B5|G|3660
28LN|1|B5|A|3661
28LN|1|B5|A|3662
28LN|1|B5|G|3663
28LN|1|B5|G|3664
*
28LN|1|B5|U|3676
28LN|1|B5|G|3677
28LN|1|B5|U|3678
28LN|1|B5|U|3679
28LN|1|B5|G|3680
28LN|1|B5|A|3681
28LN|1|B5|C|3682
28LN|1|B5|G|3683

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a