IL_28LN_207
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAAUG(PSU)CA(A2M)AGU*AAUGAAGCGCG
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_28LN_207 not in the Motif Atlas
- Homologous match to IL_9AXU_082
- Geometric discrepancy: 0.5289
- The information below is about IL_9AXU_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
28LN|1|B5|C|3707
28LN|1|B5|U|3708
28LN|1|B5|G|3709
28LN|1|B5|A|3710
28LN|1|B5|A|3711
28LN|1|B5|U|3712
28LN|1|B5|G|3713
28LN|1|B5|PSU|3714
28LN|1|B5|C|3715
28LN|1|B5|A|3716
28LN|1|B5|A2M|3717
28LN|1|B5|A|3718
28LN|1|B5|G|3719
28LN|1|B5|U|3720
*
28LN|1|B5|A|3731
28LN|1|B5|A|3732
28LN|1|B5|U|3733
28LN|1|B5|G|3734
28LN|1|B5|A|3735
28LN|1|B5|A|3736
28LN|1|B5|G|3737
28LN|1|B5|C|3738
28LN|1|B5|G|3739
28LN|1|B5|C|3740
28LN|1|B5|G|3741
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- 40S ribosomal protein S3a
- Chain BA
- Large ribosomal subunit protein uL2
- Chain Bi
- 60S ribosomal protein L36
Coloring options: