IL_28LN_208

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_208 not in the Motif Atlas

Geometric match to IL_9H3G_098

Geometric discrepancy: 0.0716

The information below is about IL_9H3G_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.5

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

14

Unit IDs

28LN|1|B5|G|3779
28LN|1|B5|C|3780
*
28LN|1|B5|G|3810
28LN|1|B5|C|3811
28LN|1|B5|A|3812
28LN|1|B5|U|3813

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Ah

60S ribosomal protein L41