IL_28LN_209

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

28LN|1|B5|A2M|3784, 28LN|1|B5|C|3790, 28LN|1|B5|C|3809

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_28LN_209 not in the Motif Atlas

Homologous match to IL_8GLP_307

Geometric discrepancy: 0.2847

The information below is about IL_8GLP_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

28LN|1|B5|C|3780
28LN|1|B5|5MC|3781
28LN|1|B5|A|3782
28LN|1|B5|A|3783
28LN|1|B5|A2M|3784
28LN|1|B5|U|3785
28LN|1|B5|G|3786
28LN|1|B5|C|3787
28LN|1|B5|C|3788
28LN|1|B5|U|3789
28LN|1|B5|C|3790
28LN|1|B5|OMG|3791
*
28LN|1|B5|OMC|3807
28LN|1|B5|G|3808
28LN|1|B5|C|3809
28LN|1|B5|G|3810

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41